Peer-Reviewed Articles

  1. Yu Tin Lin, Haohui Bao,Troy Scoggins, Boone M. Prentice, ChemRxiv: https://doi.org/10.26434/chemrxiv-2024-kxjgg. iMSminer: a data processing and machine learning package for imaging mass spectrometry.
  2. Zhongling Liang, Yingchan Guo, Abisheak Sharma, Christopher R. McCurdy, Boone M. Prentice, Analytical Chemistry, 2024, 96, 11869-11880. A multi-modal image fusion workflow incorporating MALDI imaging mass spectrometry and microscopy for the study of small pharmaceutical compounds.
  3. Zhongling Liang, Yingchan Guo, Xizheng Diao, Boone M. Prentice, Journal of the American Society for Mass Spectrometry, 2024, 35, 1797-1805. Enhancing spatial resolution in tandem mass spectrometry ion/ion reaction imaging experiments through image fusion.
  4. Tingting Yan and Boone M. Prentice, Rapid Communications in Mass Spectrometry, 2024, 38, e9844. Structural characterization of sphingomyelins from tissue using electron-induced dissociation.
  5. Michael W. Christopher, Alexander C. Klug, Jae Hwan Lee, Aiden C. Ericson, Sina Feizbakhsh Bazargani, Rhoel R. Dinglasan, Boone M. Prentice, Timothy J. Garrett, Analytical Chemistry, 2024, 96, 1039910407. Indole-3-pyruvate: analysis and control of tautomerism and reactivity.
  6. David V. Donndelinger, Tingting Yan, Troy R. Scoggins IV, Jonathan T. Specker, and Boone M. Prentice, Journal of the American Society for Mass Spectrometry, 2024, 35, 1556–1566.  De novo sequencing of phosphopeptides using a sequential charge inversion ion/ion reaction and electron capture dissociation workflow.
  7. Boone M. Prentice, International Journal of Mass Spectrometry, 2024, 117268. An analytical evaluation of tools for lipid isomer differentiation in imaging mass spectrometry.
  8. Woo-Young Kang, Arup Mondal, Julia R. Bonney, Alberto Perez, Boone M. Prentice, Analytical Chemistry, 2024, 96, 8518-8527. Structural elucidation of ubiquitin via gas-phase ion/ion cross-linking reactions using sodium-cationized reagents coupled with infrared multiphoton dissociation.
  9. Boone M. Prentice, The Analytical Scientist, Techniques and Tools, May, 8, 2024. Imaging with mass spectrometry – what’s now and what’s next?
  10. Boone M. Prentice, Journal of Mass Spectrometry, 2024, 59, e5016. “Imaging with mass spectrometry: which ionization technique is best?”
  11. Zhongling Liang, Yingchan Guo, Nicholas Ellin, Tamara I. King, Abisheak Sharma, Christopher R. McCurdy, Boone M. Prentice, Talanta, 2024, 274, 125923. Formation of multiple ion types during MALDI imaging mass spectrometry analysis of Mitragyna speciosa alkaloids in dosed rat brain tissue
  12. Nicholas R. Ellin, Yingchan Guo, Ramon Alain Miranda-Quintana, Boone M. Prentice, Digital Discovery, 2024, 3, 805-817. Extended similarity methods for efficient data mining in imaging mass spectrometry
  13. Troy R. Scoggins IV, Jonathan T. Specker, Boone M. Prentice, Analyst, 2024, 149, 2459-2468. Multiple ion isolation and accumulation events for selective chemical noise reduction and dynamic range enhancement in MALDI imaging mass spectrometry
  14. Xizheng Diao,* Natasha Haveman,* Brandon Califar, Xiaoru Dong, Boone M. Prentice, Anna-Lisa Paul, Robert J. Ferl, Life Sciences in Space Research, 2024, 41, 110-118. Spaceflight impacts xyloglucan oligosaccharides abundance in Arabidopsis thaliana root cell walls
  15. Vinata Vedam-Mai, Jacob M. Samuel, Boone M. Prentice, Neural Regeneration Research, 2024, 19, 1179-1180. Imaging Mass Spectrometry: A Molecular Microscope for Studying the Role of Lipids in Parkinson’s Disease
  16. Harrison A. Clarke, Xin Ma, Cameron J. Shedlock, Terrymar Medina, Tara R. Hawkinson, Lei Wu, Roberto A. Ribas, Shannon Keohane, Sakthivel Ravi, Jennifer Bizon, Sara Burke, Jose Francisco Abisambra, Matthew Merritt, Boone M. Prentice, Craig W. Vander Kooi, Matthew S. Gentry, Li Chen, Ramon C. Sun, 2023, bioRxiv: doi: https://doi.org/10.1101/2023.07.22.550155d. Functional spatial metabolic triple-omics in a single brain section
  17. Alexander Smith, Jonathan Specker, Katharine Hewlett, Troy Scoggins, Montana Knight, Abigail Lustig, Yanhong Li, Kirsten Evans, Yingchan Guo, Qianxuan She, Michael Christopher, Timothy Garrett, Ahmed Moustafa, Daria Van Tyne, Boone M. Prentice, Joseph Zackular, mBio, 2024, 15, e01656-23. Liberation of host heme by Clostridioides difficile-mediated damage enhances Enterococcus faecalis fitness during infection
  18. Tingting Yan, Zhongling Liang, Boone M. Prentice, Analytical Chemistry, 2023, 95, 15707-15715. Imaging and structural characterization of phosphatidylcholine isomers from rat brain tissue using sequential collision induced dissociation/electron induced dissociation (CID/EID)
  19. Julia R. Bonney, Boone M. Prentice, Analysis & Sensing, 2023, e202300063. Structural elucidation and relative quantification of fatty acid double bond positional isomers in biological tissues enabled by gas-phase charge inversion ion/ion reactions
  20. Julia R. Bonney, Woo-Young Kang, Jonathan T. Specker, Zhongling Liang, Troy R. Scoggins IV, Boone M. Prentice, Analytical Chemistry, 2023, 95, 17766-17775. Relative quantification of lipid isomers in imaging mass spectrometry using gas-phase charge inversion ion/ion reactions and infrared multiphoton dissociation
  21. Zhongling Liang and Boone M. Prentice, Journal of Mass Spectrometry, 2023, 58, e4958. Quantification of pharmaceutical compounds in tissue and plasma samples using selective ion accumulation with multiple mass isolation windows
  22. Jonathan T. Specker and Boone M. Prentice, Journal of the American Society for Mass Spectrometry, 2023, 34, 1868-1878. Separation of isobaric lipids in imaging mass spectrometry using gas-phase charge inversion ion/ion reactions
  23. Ying Xi, Alexandria L. Sohn, Alena N. Joignant, Stephanie M. Cologna, Boone M. Prentice, David C. Muddiman, Journal of Mass Spectrometry, 2023, 58, e4904. SMART: a data reporting standard for mass spectrometry imaging
  24. Xizheng Diao, Nicholas R. Ellin, Boone M. Prentice, Analytical and Bioanalytical Chemistry, 2023, 415, 4319–4331. Selective Schiff base formation via gas-phase ion/ion reactions to enable differentiation of isobaric lipids in imaging mass spectrometry
  25. Tingting Yan, Mathias-Erich N. Born, Boone M. Prentice, International Journal of Mass Spectrometry, 2023, 485, 116998- . Structural elucidation and relative quantification of sodium- and potassium-cationized phosphatidylcholine regioisomers directly from tissue using electron induced dissociation
  26. Jonathan T. Specker, Alexander B. Smith, Orlaith Keenan, Joseph P. Zackular, Boone M. Prentice, Journal of Visualized Experiments, 2022, 189, e64200. Investigation of microbial cooperation via imaging mass spectrometry analysis of bacterial colonies grown on agar and in tissue during infection
  27. Alexander B. Smith, Matthew L. Jenior, Orlaith Keenan, Jessica L. Hart, Jonathan Specker, Arwa Abbas, Paula C. Range, Chao Di, Jamal Green, Jennifer A. Gaddy, Maribeth R. Nicholson, Clare Laut, Jason A. Papin, Frederic D. Bushman, Jessi Erlichman, Robert Baldassano, Michael A. Silverman, Gary M. Dunny, Boone M. Prentice, Eric P. Skaar, Joseph P. Zackular, Nature, 2022, 611, 780-786. Enterococci enhance Clostridioides difficile pathogenesis
  28. Julia R. Bonney and Boone M. Prentice, Analytical Chemistry, 2021, 93, 6311-6322. Perspective on emerging mass spectrometry technologies for comprehensive lipid identification
  29. Jonathan T. Specker, Steven L. Van Orden, Mark E. Ridgeway, Boone M. Prentice, Analytical Chemistry, 2020, 92, 13192-13201. Identification of phosphatidylcholine isomers in imaging mass spectrometry using gas-phase charge inversion ion/ion reactions
  30. Boone M. Prentice, Daniel J. Ryan, Kerri J. Grove, D. Shannon Cornett, Richard M. Caprioli, Jeffrey M. Spraggins, Analytical Chemistry, 2020, 92, 13092-13100. Dynamic range expansion by gas-phase ion fractionation and enrichment for imaging mass spectrometry
  31. Alejandro Fernández-Vega, Eduardo Chicano-Gálvez, Boone M. Prentice, David Anderson, Feliciano Priego-Capote, María A. López Bascón, Mónica Calderón-Santiago, Maria S. Avendaño, Rocio Guzmán-Ruiz, Manuel Tena-Sempere, José A. Fernández, Richard M. Caprioli, Maria M. Malagón,, Talanta, 2020, 219, 121184. Optimization of a MALDI-imaging protocol for studying adipose tissue-associated disorders
  32. Teresa Manzo, Boone M. Prentice, Kristin Anderson, Ayush T. Raman, Aislyn Schalck, Gabriela Codreanu, Carina Nava Lauson, Silvia Tiberti, Andrea Raimondi, Marissa Jones, Michelle Reyzer, Breanna Bates, Jeffrey Spraggins, N. Heath Patterson, John McLean, Kunal Rai, Carlo Tacchetti, Sara Tucci, Jennifer Wargo, Simona Rodighiero, Karen Clise-Dwyer, Stacy Sherrod, Michael Kim, Nicholas Navin, Richard Caprioli, Phil Greenberg, Giulio Draetta,  Luigi Nezi, Journal of Experimental Medicine, 2020, 217, e20191920. Accumulation of long-chain fatty acids in the tumor microenvironment drives dysfunction in intra-pancreatic CD8+ T cells
  33. Matthias-Erich N. Born and Boone M. Prentice, International Journal of Mass Spectrometry, 2020, 11638. Structural elucidation of phosphatidylcholines from tissue using electron induced dissociation
  34. William J. Perry, N. Heath Patterson, Boone M. Prentice, Elizabeth K. Neumann, Richard M. Caprioli, Jeffrey M. Spraggins, Journal of Mass Spectrometry,  2020, e4491. Uncovering matrix effects on lipid analyses in MALDI imaging mass spectrometry experiments
  35. Tamara I. King, Abhisheak Sharma, Shyam H. Kamble, Francisco León, Erin C. Berthold, Raluca Popa, Orélia Cerlati, Boone M. Prentice, Lance R. McMahon, Christopher R. McCurdy, Bonnie A. Avery, Journal of Pharmaceutical and Biomedical Analysis, 2020, 180, 113019. Bioanalytical method development and validation of corynantheidine, a kratom alkaloid, using UPLC-MS/MS, and its application to preclinical pharmacokinetic studies
  36. Boone M. Prentice, Nathaniel J. Hart, Neil Phillips, Rachana Haliyur, Audra Judd, Radhika Armandala, Jeffrey M. Spraggins, Christopher V. Wright, Jeremy L. Norris, Alvin C. Powers, Marcela Brissova , Richard M. Caprioli, Diabetologia, 2019, 62, 1036-1047. Imaging mass spectrometry enables molecular profiling of mouse and human pancreatic tissue
  37. Boone M. Prentice, Josiah C. McMillen, Richard M. Caprioli, International Journal of Mass Spectrometry, 2019, 437, 30-37. Multiple TOF/TOF events in a single laser shot for multiplexed lipid identifications in MALDI imaging mass spectrometry
  38. Boone M. Prentice, Daniel J. Ryan, Raf Van de Plas, Richard M. Caprioli, Jeffrey M. Spraggins, Analytical Chemistry, 2018, 90, 5090-5099. Enhanced ion transmission efficiency up to m/z 24,000 for MALDI protein imaging mass spectrometry
  39. James E. Cassat*, Jessica L. Moore*, Kevin J. Wilson, Zach Stark, Boone M. Prentice, Raf Van de Plas, William J. Perry, Yaofang Zhang, John Virostko, Daniel C. Colvin, Kristie L. Rose, Audra M. Judd, Michelle L. Reyzer, Jeffrey M. Spraggins, Caroline M. Grunenwald, John C. Gore, Richard M. Caprioli, Eric P. Skaar, Science Translational Medicine, 2018, 10, eaan6361. Integrated molecular imaging reveals tissue heterogeneity driving host-pathogen interactions
  40. Daniel J. Ryan, David Nei, Boone M. Prentice, Kristie L. Rose, Richard M. Caprioli, Jeffrey M. Spraggins, Rapid Communications in Mass Spectrometry, 2018, 32, 442-450. Protein identification in imaging mass spectrometry through spatially targeted liquid micro-extractions
  41. Boone M. Prentice, Richard M. Caprioli, Vincent Vuiblet, Kidney International, 2017, 92, 580-598. Label-free molecular imaging of the kidney
  42. Tiffany M. Jarrell, Benjamin C. Owen, James S. Riedeman, Boone M. Prentice, Chris J. Pulliam, Joann Max, Hilkka I. Kenttämaa, Journal of the American Society for Mass Spectrometry, 2017, 28, 1091-1098. Laser-induced acoustic desorption/electron ionization of amino acids and peptides
  43. David G. Rizzo, Boone M. Prentice, Jessica L. Moore, Jeremy L. Norris, Richard M. Caprioli, Analytical Chemistry, 2017, 89, 2948-2955. Enhanced spatially resolved proteomics using on-tissue hydrogel-mediated protein digestion
  44. Jeremy L. Norris, Melissa A. Farrow, Danielle B. Gutierrez, Lauren D. Palmer, Nicole Muszynski, Stacy D. Sherrod, James Pino, Jamie L. Allen, Jeffrey M. Spraggins, Alex Lubbock, Ashley Jordan, William Burns, James C. Poland, Carrie Romer, M. Lisa Manier, Yuan-wei Nei, Boone M. Prentice, Kristie L. Rose, Salisha Hill, Raf Van de Plas, Tina Tsui, Nathaniel M. Braman, M. Ray Keller, Stacey A. Rutherford, Nichole Lobdell, Carlos Lopez, D. Borden Lacy, John A. McLean, John P. Wikswo, Eric P. Skaar, Richard M. Caprioli, Journal of Proteome Research, 2017, 16, 1364-1375. Integrated, high-throughput, multi-omics platform enables data-driven construction of cellular responses and reveals global drug mechanisms of action
  45. Boone M. Prentice, Chad W. Chumbley, Richard M. Caprioli, Journal of the American Society for Mass Spectrometry, 2017, 28, 136-144. Absolute quantification of rifampicin by MALDI imaging mass spectrometry using multiple TOF/TOF events in a single laser shot
  46. Boone M. Prentice, Chad W. Chumbley, Brian C. Hachey, Jeremy L. Norris, Richard M. Caprioli, Analytical Chemistry, 2016, 88, 9780-9788. Multiple time-of-flight/time-of-flight events in a single laser shot for improved matrix-assisted laser desorption/ionization tandem mass spectrometry quantification
  47. Faizan Zubair, Boone M. Prentice, Jeremy L. Norris, Paul E. Laibinis, Richard M. Caprioli, Analytical Chemistry, 2016, 88, 7302-7311. A standard reticle slide to objectively evaluate spatial resolution and instrument performance in imaging mass spectrometry
  48. Catherine A. Wakeman*, Jessica L. Moore*, Michael J. Noto, Yaofang Zhang, Marc D. Singleton, Boone M. Prentice, Benjamin A. Gilston, Ryan S. Doster, Jennifer A. Gaddy, Walter J. Chazin, Richard M. Caprioli, Eric P. Skaar, Nature Communications, 2016, 7, 1-12. The innate immune protein calprotectin promotes Pseudomonas aeruginosa and Staphylococcus aureus interaction
  49. Jiexun Bu, Christine M. Fisher, Joshua D. Gilbert, Boone M. Prentice, Scott A. McLuckey, Journal of the American Society for Mass Spectrometry, 2016, 27, 1089-1098. Selective covalent chemistry via gas-phase ion/ion reactions: an exploration of the energy surfaces associated with N-hydroxysuccinimide ester reagents and primary amines and guanidine groups
  50. Boone M. Prentice and Richard M. Caprioli, Journal of Postdoctoral Research, 2016, 4 (3), 3-13. The need for speed in MALDI imaging mass spectrometry
  51. William P. Forrest, Mohommad Choudhuri, Stefan Kilyanek, Sean N. Natoli, Boone M. Prentice, Phillip E. Fanwick, Robert Crutchley, Tong Ren, Inorganic Chemistry, 2015, 54, 7645-7652. Synthesis and electronic structure of Ru2(Xap)4(Y-gem-DEE) type compounds: effect of cross-conjugation
  52. Joshua D. Gilbert, Boone M. Prentice, Scott A. McLuckey, Journal of the American Society for Mass Spectrometry, 2015, 26, 818-825. Ion/ion reactions with ‘onium’ reagents: an approach for the gas-phase transfer of organic cations to multiply charged anions
  53. Boone M. Prentice, Chad W. Chumbley, Richard M. Caprioli, Journal of Mass Spectrometry, 2015, 50, 703-710. High-speed MALDI MS/MS imaging mass spectrometry using continuous raster sampling
  54. Joshua D. Gilbert, Christine M. Fisher, Jiexun Bu, Boone M. Prentice, Scott A. McLuckey, Journal of Mass Spectrometry, 2015, 50, 418-426. Strategies for generating peptide radical cations via ion/ion reactions
  55. Carl A. Luongo, Jiexun Bu, Nicole L. Burke, Joshua D. Gilbert, Boone M. Prentice, Steven P. Cummings, Christopher A. Reed, Scott A. McLuckey, Journal of the American Society of Mass Spectrometry, 2015, 26, 404-414. Selective removal of alkali metal cations from multiply-charged ions via gas-phase ion/ion reactions using weakly coordinating anions
  56. Ryan T. Hilger, Robert E. Santini, Carl A. Luongo, Boone M. Prentice, Scott A. McLuckey, International Journal of Mass Spectrometry, 2014, 377, 329-337. A method for isolating ions in quadrupole ion traps using an excitation waveform generated by frequency modulation and mixing
  57. Julia Savchenko, Zhi Cao, Sean N. Natoli, Steven P. Cummings, Boone M. Prentice, Phillip E. Fanwick, Tong Ren, Organometallics, 2013, 32, 6461-6467. New diruthenium bis-alkynyl compounds as potential ditopic linkers
  58. Boone M. Prentice, William M. McGee, John R. Stutzman, Scott A. McLuckey, International Journal of Mass Spectrometry, 2013, 354-355, 211-128. Strategies for the gas phase modification of cationized arginine via ion/ion reactions
  59. Boone M. Prentice, John R. Stutzman, Scott A. McLuckey, Journal of the American Society for Mass Spectrometry, 2013, 24, 1045-1052. Reagent cluster anions for multiple gas-phase covalent modifications of peptide and protein cations
  60. Boone M. Prentice and Scott A. McLuckey, Chemical Communications, 2013, 49, 947-965. Gas-phase ion/ion reactions of peptides and proteins: acid/base, redox, and covalent chemistries
  61. Boone M. Prentice, Joshua D. Gilbert, John R. Stutzman, William P. Forrest, Scott A. McLuckey, Journal of the American Society for Mass Spectrometry, 2013, 24, 30-37. Gas-phase reactivity of carboxylic acid functional groups with carbodiimides
  62. William P. Forrest, Zhi Chao, Rhodes Hambrick, Boone M. Prentice, Phillip E. Fanwick, Paul S. Wagenknecht, and Tong Ren, European Journal of Inorganic Chemistry, 2012, 5616-5620. Photoactive Cr(III)(cyclam) Complexes with Axially Bound geminal-Diethynylethenes
  63. Boone M. Prentice and Scott A McLuckey, Analytical Chemistry, 2012, 84, 7562-7569. Analysis of high mass-to-charge ions in a quadrupole ion trap mass spectrometer via an end-cap quadrupolar direct current downscan
  64. William P. Forrest, Zhi Cao, Kerry M. Hassell, Boone M. Prentice, Phillip E. Fanwick, Tong Ren. Inorganic Chemistry, 2012, 51, 3261–3269. Diruthenium(III,III) bis-alkynyl compounds with donor/acceptor substituted geminal-diethynylethene (gem-DEE) ligands
  65. Boone M. Prentice and Scott A. McLuckey, Journal of the American Society for Mass Spectrometry, 2012, 23, 736-744. Dipolar DC collisional activation in a “stretched” 3-D ion trap: the effect of higher order fields on RF-heating
  66. Boone M. Prentice, Robert E. Santini, Scott A. McLuckey, Journal of the American Society for Mass Spectrometry, 2011, 22, 1486-1492. Adaptation of a 3-D quadrupole ion trap for dipolar DC collisional activation
  67. Boone M. Prentice, Wei Xu, Zheng Ouyang, Scott A. McLuckey, International Journal of Mass Spectrometry, 2011, 306, 114-122. DC Potentials applied to an end-cap electrode of a 3-D ion trap for enhanced MSn functionality
  68. Anastasia Kharlamova, Boone M. Prentice, Teng-yi Huang, Scott A. McLuckey. International Journal of Mass Spectrometry, 2011, 300, 158-166. Electrospray droplet exposure to gaseous acids for reduction of metal counter-ions in nucleic acid ions
  69. Anastasia Kharlamova, Boone M. Prentice, Teng-yi Huang, Scott A. McLuckey. Analytical Chemistry, 2010, 17, 7422-7429. Electrospray droplet exposure to gaseous acids for the manipulation of protein charge state distributions
  70. Lynsey R. Butler, Michael R. Edwards, Russell Farmer, Kathryn J. Greenly, Sherri Hensler, Scott E. Jenkins, J. Michael Joyce, Jason A. Mann, Boone M. Prentice, Andrew E. Puckette, Christopher M. Shuford, Sarah E. G. Porter, Melissa C. Rhoten. Journal of Chemical Education, 2009, 86, 1095-1098. Investigation of the use of Cucumis sativus for remediation of chromium from contaminated environmental matrices. An interdisciplinary instrumental analysis project
 
  1. Books & Book Chapters
  2. Boone M. Prentice, In Mass Spectrometry Imaging of Small Molecules, Young-Jin Lee (Ed.), Springer Nature: 2022, in the book series Methods in Molecular Biology. “Gas-phase ion/ion reactions for lipid identification in biological tissue sections.”
  3. Boone M. Prentice and Jeffrey M. Spraggins, In: MALDI Mass Spectrometry Imaging: From Fundamentals to Spatial Omics, Tiffany Porta Siegel (Ed.), Royal Society of Chemistry: 2022, in the book series New Developments in Mass Spectrometry. “Instrumentation for MALDI MSI – Part II Detection Systems.”
  4. Boone M. Prentice, Chad W. Chumbley, Brian C. Hachey, Jeremy L. Norris, Richard M. Caprioli, In: Molecular Technologies for Detection of Chemical and Biological Agents, Joseph Banoub and Richard M. Caprioli (Eds.), Springer: Dordrecht, The Netherlands 2017, in series NATO Science for Peace and Security Series A: Chemistry and Biology. “The use of multiple fragmentation events in a single laser shot for improved MALDI TOF/TOF drug quantification.”
  5. Boone M. Prentice, Ph.D. Dissertation, Purdue University, West Lafayette, IN, 2013. “Mass spectrometry instrumentation and ion/ion reaction method development for the fundamental analysis of gas phase biomolecules.”